FBI reveals more details of anthrax investigation
Genetic fingerprints of the bacteria were critical
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WASHINGTON — The FBI on Monday offered reporters a detailed look at the science behind the investigation of the 2001 anthrax mailings, which resulted in five deaths. Genetic signatures of the bacteria were prominent clues that eventually led the investigators to two Erlenmeyer flasks at the U.S. Army Medical Research Institute of Infectious Diseases at Fort Detrick in Maryland.

The investigation had implicated Army microbiologist Bruce Ivins as the perpetrator of the anthrax mailings. Ivins committed suicide last month while under investigation. An affidavit released by the FBI earlier this month described Ivins as “sole custodian” of the batch of spores having the telltale DNA.

But at Monday’s briefings officials conceded that about 100 people had access to the same anthrax batch, called RMR-1029. One other institution, which the FBI would not name, also had anthrax with the same genetic signature, investigators said.

The FBI had obtained an anthrax sample having DNA that linked Ivins to the mailings in early 2002, but the sample was later destroyed, said chemist Vahid Majidi, assistant director for the FBI's Weapons of Mass Destruction Directorate, who led the briefing with Christian Hassell, director of the FBI Laboratory.

Four mutations lurked in the DNA of the anthrax culturing in the flasks, the same mutations that were found in samples of the anthrax mailed in the 2001 attacks, the panel reported. While mutations naturally arise in bacteria, especially over the course of several generations, the four mutations the scientists homed in on were stable, said Claire Fraser-Liggett, one of six researchers who discussed the science side of the investigation during two press briefings Monday.

“They are not random mutations that come and go,” said Fraser-Liggett, director of the newly created Institute for Genome Sciences at the University of Maryland School of Medicine in Baltimore.

There was no evidence that anything was added to the spores of the rod-shaped bacteria to make them disperse more easily, Majidi said. Preliminary tests suggested that some of the mailed spores contained silica and oxygen, resulting in speculation that the spores were mixed with something that would make them extra buoyant and perhaps more dangerous. But transmission electron microscopy localized the silica signal to inside the spore coat, said Joseph Michael, a materials scientist at Sandia National Laboratories in Albuquerque, N.M. The bacterium may naturally incorporate environmental silica into its spore coat as it develops, the researchers said.

Spores of Bacillus anthracis easily drift through the air and take on charge, which makes them stick to everything, said James Burans, associate laboratory director at the National Bioforensic Analysis Center in Frederick, Md. That’s why labs typically work with anthrax only in liquid form. “People describe it as having a mind of its own,” Burans said.

All of the anthrax mailed in the attacks was identified as belonging to one strain, the Ames strain, which is used in several labs doing basic or vaccine-related research, said Paul Keim, a microbiologist at Northern Arizona University and director of the Pathogen Genomics Division at the Translational Genomics Research Institute. But a closer look at cultures grown from spores recovered from the mailings revealed phenotypic variation — differences in color, size and texture — that hinted at underlying genetic variation that could help researchers distinguish between batches of spores.

Led by Fraser-Liggett and Jacques Ravel, also of the Institute for Genome Sciences, researchers fully sequenced 12 samples of anthrax from the mailings, with the hope that DNA would lead back to the mother stock. Four mutations — specific insertions or deletions known as “indels” that appear in the genetic code of many organisms — were identified as significant. To determine which labs were using stock with these same four mutations, investigators obtained more than 1,000 samples of Ames strain anthrax from 16 labs in the United States and some in Canada and Sweden.

Ivins consulted with investigators in 2002 regarding the sampling protocol that should be outlined in the subpoena for collecting anthrax samples, the panel reported. But Ivins then submitted a sample without following the requested lab protocol. The FBI destroyed this sample, not because it was tainted, but because all samples needed to be collected in exactly the same way in order to hold up in court. New samples submitted by Ivins did not contain the four mutations.

Later, investigators realized that Keim, whose lab was keeping a backup of every sample collected, might have the backup of the original sample Ivins submitted. This sample did have the four mutations, investigators reported Monday. Other samples from Ivins’ lab confirmed this finding. The panel would not speculate why Ivins would have submitted two different samples.

Researchers were mum about many of the specifics, saying the results eventually will appear in peer-reviewed journals.

The investigation was seminal in establishing the field of microbial forensics, said microbiologist Rita Colwell, who was director of the National Science Foundation at the time of the attacks.

The panel refused to comment on the more gumshoe detective aspects of the case but said it was unprecedented that the FBI and Department of Justice hold a briefing on a case that has yet to go to trial. Scientists involved in the case wanted to set some of the scientific record straight, Majidi said.

“I don’t think we will ever put all suspicions to bed,” said Majidi. “There’s always going to be a spore on the grassy knoll.”


Found in: Biology, Chemistry and Science & Society
Comments 4
  • There is also this interesting coincidence. Vahid Majidi is a Muslim. He is believed to be secular, but there is as much reason to ask the question of loyalty of him as there would be to question the loyalty of a Russian communist emigre during the cold war.
    http://www.ronsuskind.com/thewayoftheworld/2008/08/vahid_majidi.html
    John Toradze John Toradze
    Aug. 20, 2008 at 3:35pm
  • I do not think the FBI case is strong enough to close the investigation for the following reasons, and I am quite disappointed that Science News is joining the school of the "professionally stupid journalism".

    -----------------------------------------------------

    I have little doubt that this is a case of depression causing suicide in the face of ruin at the end of his career. The reason Bruce killed himself is that he had a family, he was 62 years old and if he fought the case, even if he won, he and his family would be destitute. He would never be able to work again and make a living. His killing himself was a rational response although guided by depression. He killed himself so they would inherit what little he had before all was destroyed. Also, had he remained alive, win or lose, civil suits would have taken everything else.

    The next step would have been to take out a line of credit on his house and give all the money to an attorney. The attorney would have burned all available funds, probably before finishing the case. Bruce would have had to plea bargain or else go with a public defender. So, he chose to kill himself rather than cop a plea. And if he had taken a plea bargain to save his family's assets, the civil suits to follow would have destroyed those assets as long as he remained alive.

    Here is a critical reason to think Ivins wasn't the culprit.

    There is an aspect of the Anthrax letters that is glaringly obvious to anyone who is a scientist. The composition of those letters changed in response to media stories about the need to have it ground up to a 5 micron size powder. A scientist working with anthrax would already know that in his sleep. It would have been so completely obvious to him that he would have done it to start with. And if he didn't grind it, that would have been deliberate. It would also have been much safer for him to not make it fine, which he would also have known. If he didn't do it to start with, then he would have continued not to do it, because that would lead suspicion away from someone knowledgeable.

    This is what I think happened, which fits the complete list of facts better.

    There was another part of the cell that pulled off the 9-11 plot. That part of the cell was focused on one man, probably an engineer from the Middle East who was educated in Europe. That guy did his part, grew up some Anthrax, and concentrated it. He might have been pissed off at the rest of his cell in Al Qaeda because they decided not to go with his plan. Probably, his plan was not used in part because he was not able to grow enough of the stuff in time. So, after 9-11, Mr. Al Qaeda Engineer takes part of his stock and mails it. He loves the media result. He reads the articles and learns more. He refines his product by grinding it in a mortar and pestle in a home-made glove box. He mails some more letters. He gets a better result.

    Jubilant, he talks to his Al Qaeda contacts. They order him to stop, and probably to leave the country so they can record and work with his hard-won knowledge about how to weaponize anthrax. Al Qaeda is on record as saying they were pursuing biological weapons.

    I am think that guy is out there and that he has been working since on a bigger, better version of his anthrax weapon.


    A discussion of an MSNBC Q & A follows.

    "Q: How could Ivins get access to powdered anthrax, since the biological warfare lab at Ft. Detrick did not deal with the toxin in that form?

    A: There is no indication that authorities can prove Ivins made the powdered form of bacteria. Investigators say that in 2001, Ivins borrowed a device, known as a lyopholizer, capable of converting anthrax spores into powder. But some colleagues say it would have been difficult, if not impossible, for Ivins to do that unnoticed."

    Ivins had a DARPA project for which he could use the device. Don't you think a smart person would have made sure not to leave such a trail? A former Russian bioweapons scientist says that the anthrax powder looked to him like it was done in an oven at home by someone who at first overbaked it, then learned from our media stories how to do it better.

    "Q: How can the FBI link Ivins to the anthrax for certain?

    A: The FBI used advanced DNA testing to track the anthrax that killed five people to a sample Ivins controlled, but as many as 12 others had access to it. It's unclear for now exactly how the FBI eliminated those others as suspects."

    I am quite certain there are other possibilities that the FBI has not looked at. Getting a couple of spores of anthrax out of the lab would be trivial. It is also likely that if someone went through the autoclaved trash, some spores would have survived if they checked through enough. It is also completely possible that waste was not all autoclaved in an arrangement where someone sold it.

    "Q: What motive would Ivins have had to unleash an attack?

    A: One investigative theory is that Ivins released the toxin as a way to test cures he was developing or a vaccine he had recently patented. But it's unclear whether the FBI can prove that. Ivins' therapist said the scientist had a history of homicidal and sociopath tendencies, but his friends say his mental deterioration was caused by the FBI's relentless pursuit."

    The "test cures" theory is ridiculous. Ivins worked on vaccines. He knew nobody was vaccinated. Ergo - nothing to test! So that idea is ridiculous. Additionally, as a government scientist, he didn't stand to make much on a patent application. Then, the application was shared with 5 people. The patent application had been submitted 18 months before and the average time to grant (if it’s granted) is 3.5 years.

    In addition, there are serious questions about this therapist.

    "Q: Did Ivins travel to Princeton, N.J., where the anthrax letters are believed to have been mailed?

    A: Authorities cannot place Ivins in Princeton when the letters were mailed. And the only explanation for why he'd make the seven-hour round trip is bizarre. Authorities say Ivins was obsessed with the sorority Kappa Kappa Gamma, dating back to his own college days. The Princeton mailbox is not far from the school's sorority office and authorities say Ivins had made unexpected visits to the sorority at other schools."

    Ivins was gone that day, but the timing lines up such that Ivins could not have had the letters collected from that mailbox that day. Timing does not line up.

    "Q: Why target media organizations and politicians?

    A: The FBI's initial behavior analysis said it's unlikely that NBC News, the New York Post, then-Sen. Tom Daschle were selected randomly. Analysts said the targets "are probably very important to the offender" and may have been the focus of his contempt. There is no indication, for now at least, that Ivins demonstrated such feelings. Under the theory that Ivins was testing his cure, lawmakers and media might drum up attention for the importance of anthrax drugs, but it's unclear whether there's any evidence about that."

    The why of this is easy. It is straightforward terrorist operations. Go for big names that will get lots of free publicity. It worked wonderfully. Still is working.

    "Q: Has the FBI matched handwriting samples from the letters?

    A: FBI handwriting analysts described a distinct writing style on the envelopes and letters sent along with the anthrax. The letters were all capitalized and block-style. The names and addresses tilted downward from left to right. The word "cannot" was written as "can not." The numeral one was written quite formally. The writer selected dashes instead of slashes in the date "09-11-01." The FBI has seized numerous documents in the case but it's unclear whether the handwriting has been matched."

    That kind of writing is exactly what you would expect from someone who didn't learn to write English letters until they were an adult. I have seen exactly that from well educated Russians who never learned English until they came here as adults. I have seen it in Central Asia from people educated in Arabic. Such writing looks childlike, and has distinctly odd quirks. Here's an exercise - Take a Russian book and write 20 words in Russian, by hand. Take a look at the result. Then show it to a Russian after asking them to copy over the same words.
    John Toradze John Toradze
    Aug. 20, 2008 at 3:30pm
  • I must admit the FBI is *not* a reliable source of information at all IMHO :- (
    Man de Hu Man de Hu
    Aug. 20, 2008 at 8:01am
  • How about we just look into the real information that needs to be investigated?

    http://video.google.com/googleplayer.swf?docid=7871917330806338693&hl=en&fs=true

    Between the US Government and the FRS, there is a lot the American people should know, and someone needs to bring it to light.
    Alan Thorne Alan Thorne
    Aug. 19, 2008 at 12:50pm
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  • Court Affidavits Unsealed in FBI Probe:
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  • Science Briefing on the Anthrax Investigation: Opening statement by Dr. Vahid Majidi. Available at [Go to].
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