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Rather than being a statement of pessimism, this new law of
conservation offers hope for finding better drug targets to treat diseases such
as diabetes, heart disease and cancer, according to research presented by Hans
V. Westerhoff, systems biologist at the Manchester Centre for Integrative
Systems Biology at the University of Manchester, England, and at the
Netherlands Institute for Systems Biology in Amsterdam. He presented the work
August 24 during the International Conference on Systems Biology in
“The system may be robust in some places, but it must also be fragile in some other places,” Westerhoff says. “If you’re developing a drug, you might want to target these fragile places.”
Westerhoff’s team found that, when all the fragility measurements for the proteins in a network are added, the total always equals one. The team’s novel measure of fragility is based on the amount of change in a protein’s activity necessary to reduce the network’s overall output by exactly 1 percent. A network’s output could be a converted form of a sugar or a signaling molecule, for example.
Since these measures of fragility always add to one, whenever part of a network becomes more robust and stable, some other protein must become more fragile to compensate.
“You could consider this a law of networks, a law of systems
biology,” comments Barbara Bakker, a systems biologist at
This tradeoff leads to some surprising results. Westerhoff and his colleagues analyzed the fragility of proteins in a signaling network called the MAP kinase pathway. Mutations that trigger overactivity of RAF, a protein in this pathway, are common in a wide variety of human cancers. Because extra activity of RAF contributes to cancer, common sense might suggest that scientists should design drugs to inhibit RAF.
“It’s the wrong thing to do,” Westerhoff says. In cancerous cells, RAF is actually less fragile than it is in cells that are healthy, Westerhoff’s team showed. That means cancer cells would be less vulnerable to a drug targeting RAF than healthy cells would be, the research suggests. In other words, the drug would cause greater damage to healthy tissues than to the tumor. Westerhoff suggested that such unintended effects could help explain why many drug candidates fail during clinical trials, often because of unexpected toxicity.
But conservation of fragility predicts that, if RAF is less fragile in cancer cells, some other protein must be more fragile. Westerhoff and his colleagues showed that a protein adjacent to RAF in the signaling cascade becomes more fragile in cancerous cells. A drug targeting this neighboring protein would disrupt tumor cells more than healthy ones.
Scientists have previously used other methods to measure the opposite trait, a protein’s robustness. But these efforts led to the conclusion that the total robustness of a network of proteins is always conserved — an idea that Westerhoff’s research overturns.
“We’ve proved that robustness is not conserved, but that fragility is,” Westerhoff says.
He adds that looking at fragility within a network, rather than just considering individual proteins, could be fruitful for finding new drug targets for a number of hard-to-treat conditions such as obesity, arthritis and even aging. “Humanity’s been able to find treatments for a lot of other, simpler diseases,” he says. “These harder diseases remain unsolved because they aren’t caused by individual proteins. They’re diseases of the network.”
Found in: Genes & Cells
- Barry, P. 2008. Quantifying the "gene for" fallacy. Science News Online (June 27). Available at [Go to].

Protein Networks' Weaknesses Principle
A. From "Finding health in fragility"
http://www.sciencenews.org/view/generic/id/35783/title/Finding_health_in_fragility
"A unifying principle for protein networks' weaknesses could aid development of new drugs"
Westerhoff adds that looking at fragility within a network, rather than just considering individual proteins, could be fruitful for finding new drug targets for a number of hard-to-treat conditions such as obesity, arthritis and even aging. “Humanity’s been able to find treatments for a lot of other, simpler diseases,” he says. “These harder diseases remain unsolved because they aren’t caused by individual proteins. They’re diseases of the network".
B. What are "diseases of the network"
How Decisions Are Made Within The OCM (outer cell membrane)
http://www.physforum.com/index.php?showtopic=14988&st=180entry325606
or
http://www.the-scientist.com/community/posts/list/122.page#373
The proteins, the many "individual proteins", are tools, tools produced by the primal 1st stratum organism, the gene, per directive of the 2nd stratum organism, the genome, consequent to a thorough crisscross checklisting of decision by the members of the genome. The need for a decision is prompted by a signal reaching the genome from within its 3rd stratum organisms, the cells.
In "simpler diseases" there are either fewer proteins involved and their effect on the "network", on the 3rd stratum organisms, the cells, is "direct" and/or there is no involvement of cells-multiplication.
In "harder diseases" there are involved many more proteins and/or also cells multiplications.
C. About time
About time that scientists guilds, their Establishment, shake off their pre Copernicus inertia and reformulate thinking and work accordingly...
Dov Henis
http://blog.360.yahoo.com/blog-P81pQcU1dLBbHgtjQjxG_Q--?cq=1
PS:
2008 Updated Life Comprehension:
1. Definitions Of Earth Life, Organism, Gene, Genome And Cellular Organisms.
Earth Life: 1. a format of temporarily constrained energy, retained in temporary constrained genetic energy packages in forms of genes, genomes and organisms 2. a real virtual affair that pops in and out of existence in its matrix, which is the energy constrained in Earth's biosphere.
Earth organism: a temporary self-replicable constrained-energy genetic system that supports and maintains Earth's biosphere by maintenance of genes.
Gene: Primal Earth's organism. (1st stratum organism)
Genome: a multigenes organism consisting of a cooperative commune of its member genes. (2nd stratum organism)
Cellular organisms: mono- or multi-celled earth organisms. (3rd stratum organism)
2. Update of life sciences conceptions is now feasible and urgently desirable
- Earth's biosphere phenomenon is a distant relative of black holes, a form of constrained
energy pocket.
- First were independent individual genes, Earth's primal organisms.
- Genes aggregated cooperatively into genomes, multigenes organisms, with genomes' organs.
- Simultaneously or consequently genomes evolved protective and functional membranes, organs.
- Then followed cellular organisms, with a variety of outer-cell membranes shapes and
functionalities.
3. Nature, Origin, Function And Purpose Of Life
Nature of Earth life: a replicating construction temporarily constraining and maintaining energy.
Origin of Earth life: serendipitous energy-induced formation of Earth's primal organisms, individual independent genes.
Nature of Earth's organisms: temporary self-replicable constrained-energy genetic systems that support and maintain Earth's biosphere by maintenance of genes.
Function of Earth life: uphold and maintain as much constrained energy as possible by upholding and maintaining Earth's biosphere.
The purpose of OUR life and its promotion is ours to choose and set. It derives solely from our cognition.
Dov Henis
http://blog.360.yahoo.com/blog-P81pQcU1dLBbHgtjQjxG_Q--?cq=1
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