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The gene sequencing future is here

By
8:29am, February 6, 2014

BIG DATA  Improvements in genome sequencing technology over the past two decades has boosted the speed and cut the cost of decoding DNA.

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As recently as the 1980s, scientists collected genetic data by laboriously tracking the diffusion of DNA molecules through slabs of gel. Now researchers stand by as machines gush billions of letters of DNA code a day, and struggle to cope with the data deluge.

In the past two decades, the speed of sequencing has leapt from around 10,000 bases per day per machine to more than 1 billion (above, blue). Since the introduction of high-throughput machines in the mid 2000s, costs have plummeted (above, orange) and the price of sequencing a whole human genome (above, gold) has tumbled almost to the long-anticipated figure of $1,000.

The biggest expense in sequencing a human genome now is the cost of storing it, says Scott Kahn, chief information officer of Illumina, a San Diego biotech company specializing in high-throughput sequencing. Someday soon, he says, it may be cheaper to resequence a person’s genome each time the data are needed than to store the information in silico.

Timeline

1995

First bacterial genome sequenced (Haemophilus influenza)
Size: 1.8 megabases

1996

First fungus genome sequenced (Saccharomyces cerevisiae: yeast)
Size: 12.1 megabases

1998

First animal genome sequenced (Caenorhabditis elegans: nematode)
Size: 97 megabases

2000

First plant genome sequenced (Arabidopsis thaliana: weed related to mustard)
Size: 115.4 megabases

2001

First human genome draft sequence (Homo sapiens)
Size: 3.2 gigabases

2003 

The human genome project is declared complete.
The ENCODE project begins. The project, funded by the NIH, was designed to find all of the functional elements of the human genome.

2004

Final version of the human genome sequence published.

2008

Human microbiome project begins. The project surveys the genomes of microbes living throughout the human body.

2012

Human microbiome project completed
Size: 3.5 terabases

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