Brain studies may reveal the purpose of a behavior both basic and mystifying
In a lab at MIT, a small black mouse named Buddy sleeps alone inside a box. A cone resembling a satellite dish sits atop his head. But the dish doesn’t receive signals from outer space. Instead it sends transmissions from deep inside Buddy’s brain to a bank of computers across the room.
Scientists like Jennie Young eavesdrop on the transmissions, essentially reading Buddy’s mind, or at least that part of his mind occupied with a recent trip along a Plexiglas track littered with chocolate sprinkles. Young and her colleagues in Susumu Tonegawa’s laboratory are monitoring nerve cells inside the hippocampus, one of the brain’s most important learning and memory centers. Some of the cells in the sea horse–shaped hippocampus fired bursts of electrical energy as Buddy moved along the track. As he sleeps in his black box, those same cells spark to life again, replaying progress along the track in fast-forward or rapid reverse.
By recording the slumbering Buddy’s brain cell activity, the scientists hope to glean clues to one of biology’s greatest mysteries: the reason for sleep. Although sleep is among the most basic of behaviors, its function has proved elusive. Scientists say sleep’s job is to save energy, or to build up substances needed during waking or to tear down unneeded connections between brain cells. Some emphasize sleep’s special role in learning and memory. Others suggest that sleep regulates emotions. Or strengthens the immune system. And some scientists believe sleep is simply something that emerges naturally from having networks of neurons wired together.
“There are as many theories of sleep’s functions as there are sleep researchers,” says Mehdi Tafti, a geneticist at the University of Lausanne in Switzerland.
None of the many models for why people (and other animals) sleep can explain all of its complexity, says Robert Stickgold of Harvard Medical School in Boston. He equates proponents of the different sleep theories to blind men describing an elephant. It’s a snake, or a tree or a wall, depending on which part of the elephant the men touch. Similarly, the answer to sleep’s function seems to depend on what approach a given researcher takes. And each proposed idea contains inconsistencies that keep other sleep researchers from embracing it.
“There’s no one theory that has enough unified evidence for it to be widely accepted,” says Paul Shaw of Washington University in St. Louis.
Many sleep theories have been widely tested, though. Using brain wave recordings, genetic analyses, word tests, video games and various other methods, researchers have uncovered many of the pieces to the puzzle of sleep, even if they don’t yet all fit together.
Asleep and fired up
Not knowing why humans spend a third of their lives unconscious hasn’t prevented scientists from describing five different stages of sleep from recordings of brain waves. Stage one, marking the transition between awake and asleep, is shallow. Stage two, which lasts the longest, features two forms of brain waves known as spindles and K-complexes (SN Online: 5/21/09). Stages three and four are the deepest, often referred to collectively as slow-wave sleep. Fifth is REM, the stage accompanied by rapid, jerky eye movements.
REM is the stage most often associated with dreaming, but plenty of dreaming
occurs in the other sleep stages, too. These stages are repeated in roughly 90-minute cycles throughout the night, with more slow-wave sleep early on and more REM toward morning.
In the first four stages of sleep, heart rate, body temperature and brain activity drop, supporting the view that sleep serves to save energy. But then REM comes along. During REM sleep, the body becomes paralyzed, which keeps people from acting out their dreams. Although the body is still as stone, the flight-or-fight response system is in overdrive, says Michael Perlis of the University of Pennsylvania in Philadelphia. Brain activity is as high or sometimes even higher than during wakefulness. “The brain is on fire,” during REM, Perlis says. “The brain is cooking, but the body is a cold fish.”
Since the brain burns up to 20 percent of the calories used by the body, REM may consume many of the calories saved during other stages of sleep.
Still, because morning brings renewed vigor, many people believe that sleep must save energy. And sleep certainly feels restorative. Recent genetic work suggests a molecular basis for that refreshment.
Allan Pack, a geneticist at the University of Pennsylvania, and his colleagues have been keeping mice up for hours after their normal bedtime. Activity of 2,000 to 3,000 genes differs in the sleep-deprived mice compared with mice that slumber undisturbed. None of the changes are dramatic, Pack says; they just nudge gene activity up or down a bit. Activity of genes involved in making large molecules consistently goes up during sleep. Examples include genes needed to build cholesterol and the oxygen-carrying substance, called heme, in red blood cells. Genes for molecules that help remodel neural connections are also revved up in sleep.
Studies in mice, rats, fruit flies and white-crowned sparrows have found similar patterns of gene activity, Pack and colleagues noted in a review in the February Trends in Molecular Medicine.
Sleep and wake are part of the metabolic cycle in the brain, Pack says. In this view, sleep is a time for replenishment and construction of cellular parts. “So when wakefulness comes along, you have the building blocks to make synapses,” the junctures between neurons through which signals flow.
From calories to connections
To test the hypothesis that sleep alters metabolism, Amita Sehgal and Susan Harbison of the University of Pennsylvania left the lights on for some fruit flies. Each night for a week, the light deprived the flies of about two hours of sleep. Males made up for the loss by sleeping far more than usual the next day. Most females, though, just lost sleep and didn’t make up the difference. The researchers also perturbed the flies’ sleep by mechanical stimulation, which involved randomly jerking the flies’ test tubes. Other flies were bumped while awake during the day, but their sleep was not disturbed.
Whether applied during day or night, mechanical stimulation resulted in decreased stores of glycogen, a starch, and increased triglycerides, a type of fat, the researchers reported in July in PLoS One. Light didn’t affect stores of either substance much.
The stress of being jostled, rather than losing sleep, is probably what alters metabolism, at least in these fruit flies, Sehgal says. The study represents a growing trend in sleep science — the idea that sleep offers some advantage besides altering metabolism and saving energy.
“We’re moving away from historical ideas of sleep saving calories,” says James Krueger, a sleep researcher at Washington State University in Pullman. “It does do that, no question. But that’s probably not why sleep evolved.”
Sleep saves about 110 calories — about a cookie’s worth — each night, Krueger says. That’s not enough to make up for missing out on eating, mating or any of the other waking activities an animal does to survive. “It’s a few more nuts. It’s not worth it. You’d rather be awake avoiding predators,” he says.
But sleep must provide some benefit that outweighs waking activities,
Krueger says — such as, perhaps, forging connections between neurons.
Krueger, in fact, suggests that sleep itself is an unavoidable result of having neurons wired together in networks. Nerve cells that work hard, electrochemically signaling neighbors, eventually need to rest and recharge. Neural quiet can spread through the brain as neurons pull their wired partners along with them over the brink into sleep, Krueger argues in a December 2008 paper in Nature Reviews Neuroscience. The quiet time may allow neurons to strengthen or weaken connections with partners.
Of course, neural remodeling is also important for learning and memory — processes often suggested as sleep’s raison d’être (SN: 4/28/07, p. 260).
But even sleep’s role in learning and remembering evokes much dispute. One controversial theory, for instance, suggests that sleep, especially the powerful slow-wave variety, weakens synapses. That keeps the brain from filling up with useless connections, say sleep researchers Giulio Tononi and Chiara Cirelli of the University of Wisconsin–Madison. Their theory, known as synaptic homeostasis, is a sort of neuronal version of survival of the fittest. As an animal or person learns things throughout the day, connections between neurons get strengthened. All synapses are weakened during sleep, so tenuous connections are severed altogether and only the strongest bonds between neurons remain. This erasing of the blackboard makes room and preserves resources for the next day’s learning, Cirelli and Tononi contend.
Some experiments seem to support the theory. While awake, rats build up levels of the protein GluR1, which helps increase the strength of synapses, the team reported in the February 2008 Nature Neuroscience. Levels of that protein drop when the animals sleep.
Studies in fruit flies show that snoozing leads to losing synapses. Cirelli and Tononi’s group reported in the April 3 Science that proteins that help determine the strength of synapses build up while flies are awake and during sleep deprivation. Protein levels drop as flies slumber.
And while fruit flies sleep, they also lose synapses formed during social interactions, another study in the same issue of Science reported. When flies socialized, synaptic connections formed between neurons. Flies allowed to sleep after the exhausting social encounters pruned away some of the connections, but flies forced to stay awake retained the connections, researchers in Shaw’s lab at Washington University found. Downsizing the number of neuronal connections could keep brain circuits from being overwhelmed by all the exciting information gathered from social interactions, Shaw says.
On the other hand, experiments with kittens suggest the opposite. In kittens with one eye sewed shut, connections between the closed eye and the brain’s visual centers weakened while the kitten was awake, Marcos Frank of the University of Pennsylvania and colleagues reported in the Feb. 12 Neuron. The open eye showed stronger connections to the visual center, but only after the kitten slept. Frank says his data show that sleep strengthens connections between brain cells rather than weakening them.
Studies of Buddy and other mice, using electrodes implanted in their brains, tend to support the results from kittens. Recordings of the activity of brain cells sensitive to the mice’s location, called “place” neurons, show that sleep allows the brain to replay events, strengthening connections between neurons and preserving long-term memories.
When Young records the firing of Buddy’s neurons, a speaker crackles with what sounds to the untrained listener like radio static. To Young’s ear the static is the sound of memories being made. Each time an electrode detects electrical activity in one of the neurons, it translates the activity to those audible crackles and to tracings on a computer screen.
While Buddy is awake and moving around in his box, running a maze or exploring new objects, his brain cells fire in a rhythmic pattern. As he sleeps, his brain waves slow down. But small, rapid spurts of brain cell activity, called ripples, interrupt the slow-rolling waves of sleep and burst above the background static. During those ripples, which last a fraction of a second, the place-denoting neurons fire in the same order as when the mouse was awake and exploring.
MIT’s Matthew Wilson was among the first to discover these ripples. Ripples during slow-wave sleep replay the day’s events, but the timing is compressed. During REM sleep, he says, rats and mice also replay events, but in real time, and not always in the same order or way they actually happened.
Cells in the hippocampus fire off a burst of ripple waves first. Then, 100 milliseconds later, cells in the prefrontal cortex, commonly considered to be the seat of the brain’s “executive centers,” take up the refrain, Caltech researchers reported in the Feb. 26 Neuron. Such bursts of activity could represent transfer of information from temporary memory storage in the hippocampus to long-term storage in the cortex, Wilson says. In REM sleep, the timing of the firing between the hippocampus and the cortex is not as tightly coordinated as it is in slow-wave sleep.
Rats relive memories while awake, too, and that replay can help the animals plan their next move, Wilson and colleagues show in the Aug. 27 Neuron.
Scientists have speculated that such replay is also important for forming long-term memories. Researchers in Tonegawa’s lab tested this theory directly: They blocked ripples by essentially paralyzing part of the hippocampus with tetanus toxin. Apart from diminished ripples, the mice slept normally and could remember tracks they had run for a short time. But the mice were unable to form long-term memories, the team reported in the June 25 Neuron. When researchers reversed the effect of the toxin, the ripples returned, along with the ability to form long-term memories, indicating that replaying and rehearsing memories during slow-wave sleep is a key step in solidifying them.
Across the Charles River in Boston, Harvard Medical School researchers have some evidence that replay may also be important for humans. Stickgold and Erin Wamsley have recruited volunteers to play a maze video game. After playing the game, some volunteers take a nap and some stay awake watching videos. The participants are awakened at the first sign that they are about to enter REM sleep, but some still report vivid dreams — some tangentially related to the game, such as hearing the music or exploring bat caves reminiscent of the maze. Preliminary results indicate that people who report game-related dreams improve their performance more when tested again. The dreamers improve more than either people who remained awake and thought about the game or people who slept, but didn’t remember dreaming about the game.
“To us it’s an indication that some of the networks related to that learning are active” during sleep, Wamsley says.
Its importance for memory is the only proposed explanation for sleep that contains a clear reason why consciousness must be shut down, says Stickgold. Human brains don’t have TiVo, with the ability to record one thing while watching another. People use the same brain areas to perceive the world and then process what is happening. To fully digest information gathered throughout the day, at some point the brain has to block more input, he speculates.
In slow-wave sleep, the hippocampus shows home movies of the day’s events to the cortex. During REM sleep, the hippocampus is issued a gag order, leaving the cortex to freely associate different pieces of information without the detail-oriented hippocampus stepping in to say, “no, this is what really happened.” That free association may allow the brain to tie disparate experiences and facts together, making them easier to remember, or prompting new solutions to problems encountered during the day.
Learning and memory studies also suggest that sleep helps extract the gist of memories, enabling them to be filed under the correct headings, Stickgold says. How the brain does this is illustrated by studies in which participants “remember” that they learned a word such as hospital when actually the list of words they memorized contained doctor, nurse, stethoscope, bed and patient, but not hospital. Such associations give memories context and meaning.
“What your brain is leaving you with in the morning is a memory that is less accurate, but more useful,” Stickgold says.
Sleep researchers still don’t know how the brain decides which memories to review, edit and save, and which are junk, says Matthew Walker of the University of California, Berkeley. Emotion-associated chemicals may mark memories as important and worth saving, or send up a red flag to the brain that the memory is problematic. Over time, as sleep extracts the informational core of memories, it may also strip away the emotional blanket surrounding them, so that a person learns the lesson of the memory without all the drama of emotion. REM sleep in particular “is like group therapy for memories,” he says.
Walker theorizes that this process may go awry in post-traumatic stress disorder. He lays out his case for sleep’s role in processing emotional memories in the Annals of the New York Academy of Science’s Year in Cognitive Neuroscience 2009. Removing the emotional blanket from memories is probably possible only during sleep, when outside stimulus is shut off, he says.
Wilson agrees that sleep can be an unfettered time to come up with new solutions. “The ‘problem’ with the awake state is that it is being influenced by the outside world,” he says. “It is constrained by what you’re currently experiencing. During sleep you can explore. The breadth of experience one has access to is much greater. I think it’s very likely that during sleep you have the flexibility to evaluate and solve problems in novel ways.”
REM sleep may be just what is needed to get creative juices flowing, suggests a study in the June 23 Proceedings of the National Academy of Sciences. People who had a nap with REM sleep performed almost 40 percent better on a word test requiring a creative solution than people who didn’t nap or had only non-REM naps, researchers led by psychologist Sara Mednick of the University of California, San Diego show. The improvement happened only when participants drew information from a seemingly unrelated word test administered earlier in the day to solve the new problems. REM sleep seemed to help make that otherwise unrecognized connection.
“People in the REM group were able to use information they didn’t know they had in their brains,” Mednick says. Still, she doesn’t believe all dreams mean something or that “sleeping on it” will solve every problem.
“Some dreams are going to be very, very meaningful, and some dreams are just your brain rooting through things that don’t mean anything,” she says.
Despite the evidence of sleep’s role in brain performance, not all researchers believe that aspect to be the end of the sleep story.
“The notion that sleep is by the brain, for the brain — which is a motto in the field — is outdated,” says Eve Van Cauter of the University of Chicago. “Sleep affects everything in the body and everything in the body affects sleep.”
Short-term studies show that cognitive problems follow sleep deprivation, but scientists have no idea whether those problems relate to longer-term decline in memory or degenerative brain disorders, Van Cauter says.
Nearly 100 studies link sleep loss to cardiovascular disease, she says. “But we don’t even have 10 studies on whether short sleep contributes to cognitive decline or dementia.” (See Page 11.)
Others agree that sleep plays an important role in regulating the immune system. In fact, sleep may have evolved to improve the immune system’s ability to fight off parasites, argue Patrick McNamara of Boston University and his colleagues in the Jan. 9 BMC Evolutionary Biology.
Species of animals that spend more time sleeping each day tend to have higher counts of infection-fighting white blood cells, a database analysis revealed. The more sleep on average a species gets, the fewer parasites plague its members, and the parasites that do infect longer-sleeping species are not as prevalent in their populations as parasites that sicken shorter-sleeping species.
Still, whether sleep’s purpose is fighting parasites, making memories or modifying metabolism remains as much a matter of dispute as the blind men’s competing images of the elephant. But perhaps that parable suggests a strategy for progress.
“The only mistake the blind men made is that they argued with each other,” says Stickgold. If sleep researchers are willing to take a step back, confer and concede that others may have a point, perhaps one day the mystery of sleep will be solved.
Donlea, J.M., N. Ramanan, and P.J. Shaw. 2009. Use-dependent plasticity in clock neurons regulates sleep need in Drosophila. Science 324(April 3):105–108. doi: 10.1126/science.1166657
Gilestro, G.F., G. Tononi, and C. Cirelli. 2009. Widespread changes in synaptic
markers as a function of sleep and wakefulness in Drosophila. Science 324(April 3):109–112. doi: 10.1126/science.1166673
Mignot, E. 2008. Why we sleep: The temporal organization of recovery. PLoS Biology 6(April): e106. doi:10.1371/journal.pbio.0060106 www.plosbiology.org
Cirelli, C. 2009. The genetic and molecular regulation of sleep: From fruit flies to humans. Nature Reviews Neuroscience 10(August): 549-560. doi:10.1038/nrn2683
Nakashiba, T., et al. 2009. Hippocampal CA3 output Is crucial for ripple-associated reactivation and consolidation of memory. Neuron 62(June 25):781–787. DOI 10.1016/j.neuron.2009.05.013
Harbison, S.T., and A. Sehgal. 2009. Energy stores are not altered by long-term partial sleep deprivation in Drosophila melanogaster. PLoS One 4(July 10):e6211. doi:10.1371/journal.pone.0006211
Vyazovskiy, V.V., et al. 2008. Molecular and electrophysiological evidence for net synaptic potentiation in wake and depression in sleep. Nature Neuroscience 11(February): 200-208. doi:10.1038/nn2035
Krueger, J.M., et al. 2008. Sleep as a fundamental property of neuronal assemblies. Nature Reviews Neuroscience 9(December):910-919. doi:10.1038/nrn2521
Mackiewicz, M., et al. 2009. What are microarrays teaching us about sleep? Trends in Molecular Medicine 15(Feb.):79-87. doi:10.1016/j.molmed.2008.12.002
Aton, S.J., et al. 2009. Mechanisms of sleep-dependent consolidation of cortical plasticity. Neuron 61(Feb. 12):454–466. DOI 10.1016/j.neuron.2009.01.007
Zimmerman, J.E., et al. 2008. Conservation of sleep: insights from non-mammalian model systems. Trends in Neuroscience 31(July):371-376. doi:10.1016/j.tins.2008.05.001
Wierzynski, C.M., et al. 2009. State-dependent spike-timing relationships between hippocampal and prefrontal circuits during sleep. Neuron 61(Feb. 26):587–596. DOI 10.1016/j.neuron.2009.01.011
Davidson, T.J., F. Kloosterman, and M.A. Wilson. 2009. Hippocampal replay of extended experience. Neuron 63(Aug. 27):497–507. DOI: 10.1016/j.neuron.2009.07.027
Payne, J.D., et al. 2009. The role of sleep in false memory formation. Neurobiology of Learning and Memory 92(Oct.):327–334. doi:10.1016/j.nlm.2009.03.007
Walker, M.P. 2009. The role of sleep in cognition and emotion. Annals of the New York Academy of Sciences: The Year in Cognitive Neuroscience 2009 1156(March):168–197. doi: 10.1111/j.1749-6632.2009.04416.x
Cai, D.J., et al. 2009. REM, not incubation, improves creativity by priming associative networks. Proceedings of the National Academy of Sciences 106(June 23):10130–10134. www.pnas.org/cgi/doi/10.1073/pnas.0900271106
Preston, B.T., et al. 2009. Parasite resistance and the adaptive significance of sleep. BMC Evolutionary Biology 9(Jan. 9). doi:10.1186/1471-2148-9-7. [Go to]
Cirelli, C., C.M. Gutierrez, and G. Tononi. 2004. Extensive and divergent effects of sleep and wakefulness on brain gene expression. Neuron 41(Jan. 8):35–43.
Benedict, C. et al. 2009. Early morning rise in hypothalamic—pituitary—adrenal activity: A role for maintaining the brain’s energy balance. Psychoneuroendocrinology 34(April):455–462. doi:10.1016/j.psyneuen.2008.10.010
Gais, S., et al. 2008. Visual–procedural memory consolidation during sleep blocked by glutamatergic receptor antagonists. Journal of Neuroscience 28(May 21):5513–5518. DOI:10.1523/JNEUROSCI.5374-07.2008
Li, C-y.T., M.-m. Poo, and Y. Dan. 2009. Burst spiking of a single cortical neuron modifies global brain state. Science 324(May 1): 643-646. doi: 10.1126/science.1169957
Mölle, M., et al. 2009. The influence of learning on sleep slow oscillations and associated spindles and ripples in humans and rats. European Journal of Neuroscience 29(March):1071–1081. doi:10.1111/j.1460-9568.2009.06654.x
Siegel, J.M., 2009. Sleep viewed as a state of adaptive inactivity. Nature Reviews Neuroscience 10(October):747-753. doi:10.1038/nrn2697
Booth, V., and G.R. Poe. 2006. Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: Relevance to REM sleep reactivation and memory consolidation. Hippocampus 16:161–173. DOI 10.1002/hipo.20143
Read Harvard Medical School’s sleep guide at www.understandingsleep.org
Saey, T.H. 2009. Sleep may clear the decks for next day’s learning. Fruit fly studies find that snoozing prunes connections between brain cells. Science News Online (April 2). [Go to]
Saey, T.H. 2008. Sleep makes room for memories. Study shows sleep reduces harmful buildup of too many connections in the brain. Science News 174(Dec. 20):9. [Go to]
Saey, T.H. 2008. Dopamine could help the sleep deprived still learn. Study is the first to reveal molecular processes that connect learning and sleep. Science News 174(Aug. 30):8. [Go to]
Saey, T.H. 2008. More evidence that flies sleep like people. Science News 173(Feb. 16):109. [Go to]
Saey, T.H. 2009. Neurons take a break during stage 2 sleep: The time off prevents interruptions that could wake a person up. Science News Online May 21. [Go to]
Bower, B. 2007. Sleep on it: Time delay plus slumber equals memory boost.
Science News 171(April 28):260. [Go to]
Bower, B. 2002. Snooze power: Midday nap may awaken learning potential. Science News 161(June 1):341. [Go to]
Bower, B. 2000. Certain memories may rest on a good sleep. Science News 158(Dec. 2):358. [Go to]
Bower, B. 2004 Sleepy brains take learning seriously. Science News 165(June 26):414. [Go to]
Bower, B. 2005. Brains disconnect as people sleep. Science News 168(Oct. 8):237. [Go to]
Bower, B. 2003. Restoring recall: Memories may form and reform, with sleep. Science News 164(Oct. 11):228. [Go to]
Bower, B. 2006. Revving up recall while fast asleep. Science News 170(Nov. 18):334. [Go to]
Healthy Sleep, a guide to sleep from Harvard Medical School: [Go to]
The National Center on Sleep Disorders Research at the National Institutes of Health: [Go to]
The National Sleep Foundation: [Go to]
The University of Washington’s Neuroscience for Kids page on sleep: [Go to]
Understanding sleep from the National Institute of Neurological Disorders and Stroke: [Go to]
A curriculum supplement for grades 9-12 from the National Institutes of Health: [Go to]
Sleep Homepages contains many links with information about sleep
[Go to] and includes a sleep syllabus: [Go to]
The University of Texas Health Science Center at San Antonio has an activity guide for teachers explaining somnograms: [Go to]
Take a self-assessment test to see if you are a morning or evening type: [Go to]